Deep scratches with WFP??
When a customer notices a scratch, the first culprit has to be the window cleaner. On brand new glass or builders cleans this is the most likely cause, but if you've been cleaning the glass for some time without any problems, I don't see how WFP can be responsible. I cleaned windows for 40 years trad, and the favourite tool was a scrim - used properly it achieved perfect results AND IN 40 YEARS I NEVER MANAGED TO SCRATCH A WINDOW. Bearing in mind the scrim was chucked over my shoulder, dropped on the ground, used to wipe sills etc etc then if scratching glass was as easy as it appears by WFP, using my old method I should have scratched acres of the stuff!!
The more likely explanation is that the scratch was there all along, but only came to the customers attention when the sun was at a particular angle and because the glass is now perfectly clean (no detergent film etc filling the scratch) it is more noticeable than before.
My solution to this is to take the brush back to the customer, let them handle it and see how soft it is, then challenge them to scratch another pane with it, and if they can I promise to pay for both repairs.
No-ones ever managed to scratch glass when they tried :
Veluxes may well be another story, but regularly cleaned vertical window glass - I don't believe it.