Simon,
Yes to a small amount of pure being produced, you have good mains pressure so even with the drain tap open there is still enough pressure to get through the membrane to produce a little pure water.
Don't worry about that! It's normal, and you do not need to fit an extra tap to close off the pure feed.
I also had that problem with the pre-filters affecting the water pressure and causing a big reduction in output with an alarmingly raised TDS reading too!!!
Try removing the particulate filter from the housing, re-fit the housing and run the system again, I'm not a betting man, but if I was I'd bet that your pressure readings will be back to normal and your TDS readings will drop to - or close to - what you had before.
I've no idea why the particulate filter caused the problem, no idea either how many microns it was either, bought new ones from WCW, just the standard ones...god only knows what micron filter they are either, but it did the trick.
If you find the same as I did, contact Gardeners and tell them what happened, they are pretty good, and I'm sure they'll replace them for you.
Oh and don't run your system without having your particulate filter in place for too long!...those 4040 membranes are not cheap to replace if you ruin one!
Although I risked it as I needed water! No harm done as it happens, but as your dad may have said to you (often in my own case) "Don't do as I do, do as I tell you!"
I might take dumb-arse risks but it wouldn't be very professional of me to recommend others to do so
Ian