Hi Roland the stone is a sawn, high porous indian sandstone, the type is called teakwood, lovely looking stuff, I had the same problem a few years ago, same staining, it's actually algae and you may need a few applications of hypo left to soak in over night as the staining is actually in the stone, deep down in the stone, due to the porosity of it.
I went back 3/4 times to a job just putting hypo down then leaving it over night to soak down into it.
Hope you sort it mate.